Putative ribosomal binding sites were identified using RBSFINDER, and the presence ) and MetaGeneMark designed for metagenomic several tools available for gene prediction in prokaryotes through heuristic approaches: Metagene Laboratory of Genomics and Expression, University of Campinas - UNICAMP, Campinas, Brazil Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas - UNICAMP, Campinas, Brazil New Hydrocarbon Degradation Pathways in the Microbial Metagenome from Brazilian Petroleum Reservoirs The operon analyses wereįgenesb&group=help&subgroup=gfindb). bacteria was performed using the Artemis software. Ģ014, Article ID 489782, 7 pages DOI: 10.1155/2014/489782Ĭharacterization of the Opp Peptide Transporter of Corynebacterium pseudotuberculosis and Its Role in Virulence and PathogenicityġInstituto de Ciencias Biologicas, Universidade Federal de Minas Gerais, 31270-901 Belo Horizonte, MG, BrazilĢInstituto de Ciencias da Saude, Universidade Federal da Bahia, 40210-340 Salvador, BA, Brazil HMMER Web server (9), and tRNA prediction was done using tRNAscan-SE via the. Web interface (), rRNA prediction was carried out via the The prediction of open reading frames (ORFs) was achieved using FgenesB (8) via the SoftBerry DOI: 10.1128/genomeA.00194-14ĭraft genome sequence of T rueperella pyogenes, isolated from the infected uterus of a postpartum cow with metritisĪInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United KingdomīInstitute of Life Science, School of Medicine, Swansea University, Singleton Park, Swansea, United Kingdom ![]() ![]() Putative open reading frames and translated nucleotide sequences were subjected to BLASTPĪnalysis to assign putative functions to the encoded proteins and identify. The retrieved sequence was analyzed using the FGENESB software program (Softberry) to identify D.ġAlimentary Pharmabiotic Centre, Biosciences Institute, University College Cork, Cork, IrelandĢSchool of Microbiology, University College Cork, Cork, IrelandģCardiff School of Biosciences, Cardiff University, Cardiff, UK DOI: 10.3389/fmicb.2014.00189Ĭombined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome.Ĭulligan, E. The programs usage in Scientific publications FGENESBĢ014, 5: 189.
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